STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VE01_04855Uncharacterized protein. (985 aa)    
Predicted Functional Partners:
VE01_07701
Uncharacterized protein.
   
 0.861
VE01_01631
ANK_REP_REGION domain-containing protein.
   
  0.580
VE01_03937
ANK_REP_REGION domain-containing protein.
   
  0.556
EAF3
Esa1p-associated factor.
    
  0.466
VE01_06626
Ubiquitin-like domain-containing protein.
    
  0.457
VE01_02662
Uncharacterized protein.
    
  0.445
TFC4
Transcription factor TFIIIC subunit tfc4.
    
  0.437
TFC1
Tau 95 subunit of transcription factor TFIIIC.
    
  0.436
UBC9
E2 SUMO-conjugating protein ubc9; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.418
SEC16
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
    
  0.416
Your Current Organism:
Pseudogymnoascus verrucosus
NCBI taxonomy Id: 342668
Other names: P. verrucosus, UAMH 10579
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