STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HSE1ESCRT-0 subunit protein hse1. (689 aa)    
Predicted Functional Partners:
VPS27
Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.
  
0.988
VE01_04046
Uncharacterized protein.
   
 0.913
VE01_01175
Uncharacterized protein.
   
 0.910
VE01_08675
MPN domain-containing protein.
    
 0.901
DOA4
Ubiquitin-specific protease doa4; Belongs to the peptidase C19 family.
    
 0.892
VE01_07728
Ubiquitin-like domain-containing protein.
    
 0.877
VE01_06547
BZIP domain-containing protein.
   
 0.848
RPS27A
Ribosomal 40S subunit protein S27A.
   
 0.848
VE01_01246
Ubiquitin-like domain-containing protein.
    
  0.838
RRN7
Pol I core factor CF.
    
  0.838
Your Current Organism:
Pseudogymnoascus verrucosus
NCBI taxonomy Id: 342668
Other names: P. verrucosus, UAMH 10579
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