STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPT1GTP-binding protein of the rab. (220 aa)    
Predicted Functional Partners:
VE01_10106
Uncharacterized protein.
   
 0.997
VE01_09477
Rab-GAP TBC domain-containing protein.
    
 0.997
GDI1
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.995
GEA2
GDP/GTP exchange factor for ARF.
    
 0.995
VE01_10131
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.984
BET5
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.984
BET3
Trafficking protein particle complex subunit BET3.
   
 0.984
TRS20
TRAPP subunit.
    
 0.983
TRS31
Trafficking protein particle complex subunit; Plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.
    
 0.983
VE01_08876
Uncharacterized protein.
    
 0.981
Your Current Organism:
Pseudogymnoascus verrucosus
NCBI taxonomy Id: 342668
Other names: P. verrucosus, UAMH 10579
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.