Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
IPI1 | IPI3 | A0A1B8GP66 | A0A1B8GJ04 | rRNA processing protein. | Pre-rRNA-processing protein ipi3. | 0.999 |
IPI1 | VE01_01128 | A0A1B8GP66 | A0A1B8GXS5 | rRNA processing protein. | KIX_2 domain-containing protein. | 0.572 |
IPI1 | VE01_01917 | A0A1B8GP66 | A0A1B8GWE1 | rRNA processing protein. | Uncharacterized protein. | 0.876 |
IPI1 | VE01_08783 | A0A1B8GP66 | A0A1B8GCB7 | rRNA processing protein. | Uncharacterized protein. | 0.850 |
IPI3 | IPI1 | A0A1B8GJ04 | A0A1B8GP66 | Pre-rRNA-processing protein ipi3. | rRNA processing protein. | 0.999 |
IPI3 | VE01_01128 | A0A1B8GJ04 | A0A1B8GXS5 | Pre-rRNA-processing protein ipi3. | KIX_2 domain-containing protein. | 0.579 |
IPI3 | VE01_01917 | A0A1B8GJ04 | A0A1B8GWE1 | Pre-rRNA-processing protein ipi3. | Uncharacterized protein. | 0.892 |
IPI3 | VE01_09586 | A0A1B8GJ04 | A0A1B8G9J3 | Pre-rRNA-processing protein ipi3. | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.401 |
SIN4 | VE01_01128 | A0A2P2SWY2 | A0A1B8GXS5 | Mediator of RNA polymerase II transcription subunit 16; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | KIX_2 domain-containing protein. | 0.541 |
SIN4 | VE01_07701 | A0A2P2SWY2 | A0A1B8GES5 | Mediator of RNA polymerase II transcription subunit 16; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein. | 0.835 |
SIN4 | VE01_09586 | A0A2P2SWY2 | A0A1B8G9J3 | Mediator of RNA polymerase II transcription subunit 16; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.589 |
VE01_01128 | IPI1 | A0A1B8GXS5 | A0A1B8GP66 | KIX_2 domain-containing protein. | rRNA processing protein. | 0.572 |
VE01_01128 | IPI3 | A0A1B8GXS5 | A0A1B8GJ04 | KIX_2 domain-containing protein. | Pre-rRNA-processing protein ipi3. | 0.579 |
VE01_01128 | SIN4 | A0A1B8GXS5 | A0A2P2SWY2 | KIX_2 domain-containing protein. | Mediator of RNA polymerase II transcription subunit 16; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.541 |
VE01_01128 | VE01_01917 | A0A1B8GXS5 | A0A1B8GWE1 | KIX_2 domain-containing protein. | Uncharacterized protein. | 0.534 |
VE01_01128 | VE01_04623 | A0A1B8GXS5 | A0A1B8GN01 | KIX_2 domain-containing protein. | Uncharacterized protein. | 0.525 |
VE01_01128 | VE01_05173 | A0A1B8GXS5 | A0A1B8GI92 | KIX_2 domain-containing protein. | CRIB domain-containing protein. | 0.534 |
VE01_01128 | VE01_07701 | A0A1B8GXS5 | A0A1B8GES5 | KIX_2 domain-containing protein. | Uncharacterized protein. | 0.869 |
VE01_01128 | VE01_08783 | A0A1B8GXS5 | A0A1B8GCB7 | KIX_2 domain-containing protein. | Uncharacterized protein. | 0.563 |
VE01_01128 | VE01_08840 | A0A1B8GXS5 | A0A1B8GBL7 | KIX_2 domain-containing protein. | Uncharacterized protein. | 0.556 |
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