STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMA20Translation machinery-associated protein 20; Involved in translation; Belongs to the TMA20 family. (189 aa)    
Predicted Functional Partners:
TMA22
Translation machinery-associated protein 22.
   
 
 0.982
VE01_02592
Uncharacterized protein.
   
 
 0.871
SUI1
Eukaryotic translation initiation factor eIF-1.
   
 
 0.871
VE01_05565
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
   0.745
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
    
   0.736
RPS3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
   0.735
RPS9
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
 
 0.689
RPS7
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
   0.688
RPS20
40S ribosomal protein S20.
   
   0.680
RPS13
Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.
   
   0.672
Your Current Organism:
Pseudogymnoascus verrucosus
NCBI taxonomy Id: 342668
Other names: P. verrucosus, UAMH 10579
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.