Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PNA2_0868 | PNA2_0872 | PNA2_0868 | PNA2_0872 | D-arabino 3-hexulose 6-phosphate formaldehyde lyase. | Hypothetical protein. | 0.546 |
PNA2_0868 | PNA2_1513 | PNA2_0868 | PNA2_1513 | D-arabino 3-hexulose 6-phosphate formaldehyde lyase. | Hypothetical protein. | 0.507 |
PNA2_0872 | PNA2_0868 | PNA2_0872 | PNA2_0868 | Hypothetical protein. | D-arabino 3-hexulose 6-phosphate formaldehyde lyase. | 0.546 |
PNA2_0872 | PNA2_0874 | PNA2_0872 | PNA2_0874 | Hypothetical protein. | Ribosomal protein s18 alanine acetyltransf erase related protein. | 0.633 |
PNA2_0872 | PNA2_1513 | PNA2_0872 | PNA2_1513 | Hypothetical protein. | Hypothetical protein. | 0.515 |
PNA2_0872 | flpA | PNA2_0872 | PNA2_0576 | Hypothetical protein. | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.487 |
PNA2_0872 | rnhB | PNA2_0872 | PNA2_0238 | Hypothetical protein. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.430 |
PNA2_0872 | rnj | PNA2_0872 | PNA2_1505 | Hypothetical protein. | Hypothetical protein; An RNase that has 5'-3' exonuclease activity. May be involved in RNA degradation; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Archaeal RNase J subfamily. | 0.544 |
PNA2_0872 | rps15 | PNA2_0872 | PNA2_0593 | Hypothetical protein. | 30S ribosomal protein S15P. | 0.504 |
PNA2_0872 | smc | PNA2_0872 | PNA2_0399 | Hypothetical protein. | Chromosome segregation protein smc1; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.531 |
PNA2_0872 | truA | PNA2_0872 | PNA2_1677 | Hypothetical protein. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family. | 0.433 |
PNA2_0874 | PNA2_0872 | PNA2_0874 | PNA2_0872 | Ribosomal protein s18 alanine acetyltransf erase related protein. | Hypothetical protein. | 0.633 |
PNA2_0874 | smc | PNA2_0874 | PNA2_0399 | Ribosomal protein s18 alanine acetyltransf erase related protein. | Chromosome segregation protein smc1; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.631 |
PNA2_1513 | PNA2_0868 | PNA2_1513 | PNA2_0868 | Hypothetical protein. | D-arabino 3-hexulose 6-phosphate formaldehyde lyase. | 0.507 |
PNA2_1513 | PNA2_0872 | PNA2_1513 | PNA2_0872 | Hypothetical protein. | Hypothetical protein. | 0.515 |
PNA2_1513 | flpA | PNA2_1513 | PNA2_0576 | Hypothetical protein. | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.831 |
PNA2_1513 | rnhB | PNA2_1513 | PNA2_0238 | Hypothetical protein. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.525 |
PNA2_1513 | rps15 | PNA2_1513 | PNA2_0593 | Hypothetical protein. | 30S ribosomal protein S15P. | 0.985 |
PNA2_1513 | smc | PNA2_1513 | PNA2_0399 | Hypothetical protein. | Chromosome segregation protein smc1; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.585 |
PNA2_1513 | truA | PNA2_1513 | PNA2_1677 | Hypothetical protein. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family. | 0.505 |
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