STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001418085_01962Unannotated protein. (189 aa)    
Predicted Functional Partners:
GCA_001418085_01963
Unannotated protein.
       0.717
GCA_001418085_01961
Unannotated protein.
       0.568
GCA_001418085_00076
Unannotated protein.
    
   0.552
GCA_001418085_01909
Unannotated protein.
    
   0.552
GCA_001418085_02178
Unannotated protein.
    
   0.552
GCA_001418085_01393
Unannotated protein.
  
    0.540
GCA_001418085_00148
Unannotated protein.
    
   0.527
GCA_001418085_01964
Unannotated protein.
       0.490
GCA_001418085_03356
Unannotated protein.
   
   0.470
GCA_001418085_02689
Unannotated protein.
     
 0.444
Your Current Organism:
Lacinutrix algicola
NCBI taxonomy Id: 342954
Other names: JCM 13825, KCCM 42313, L. algicola, Lacinutrix algicola Nedashkovskaya et al. 2008, Lacinutrix sp. AKS293, strain AKS293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.