STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001418085_02100Unannotated protein. (609 aa)    
Predicted Functional Partners:
GCA_001418085_02101
Unannotated protein.
 
     0.953
GCA_001418085_02102
Unannotated protein.
 
     0.927
GCA_001418085_00070
Unannotated protein.
    
 0.714
GCA_001418085_01828
Unannotated protein.
    
 0.714
GCA_001418085_03370
Unannotated protein.
    
 0.714
GCA_001418085_01579
Unannotated protein.
  
  
  0.669
GCA_001418085_02728
Unannotated protein.
  
  
  0.657
GCA_001418085_01597
Unannotated protein.
  
  
  0.648
GCA_001418085_00378
Unannotated protein.
    
  0.606
GCA_001418085_00382
Unannotated protein.
    
  0.606
Your Current Organism:
Lacinutrix algicola
NCBI taxonomy Id: 342954
Other names: JCM 13825, KCCM 42313, L. algicola, Lacinutrix algicola Nedashkovskaya et al. 2008, Lacinutrix sp. AKS293, strain AKS293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.