STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001418015_00822Unannotated protein. (385 aa)    
Predicted Functional Partners:
GCA_001418015_00824
Unannotated protein.
 
 
 0.984
GCA_001418015_00825
Unannotated protein.
 
 
 0.982
GCA_001418015_00877
Unannotated protein.
 
 
 0.959
GCA_001418015_00821
Unannotated protein.
 
     0.937
GCA_001418015_00823
Unannotated protein.
 
     0.930
GCA_001418015_00829
Unannotated protein.
 
 
 0.921
GCA_001418015_00826
Unannotated protein.
 
   
 0.900
GCA_001418015_00830
Unannotated protein.
 
     0.838
GCA_001418015_00831
Unannotated protein.
 
     0.813
GCA_001418015_00836
Unannotated protein.
 
  
 0.797
Your Current Organism:
Lacinutrix mariniflava
NCBI taxonomy Id: 342955
Other names: JCM 13824, KCCM 42306, L. mariniflava, Lacinutrix mariniflava Nedashkovskaya et al. 2008, Lacinutrix sp. AKS432, strain AKS432
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.