STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001418015_01418Unannotated protein. (74 aa)    
Predicted Functional Partners:
GCA_001418015_01421
Unannotated protein.
 
     0.691
GCA_001418015_01419
Unannotated protein.
       0.688
GCA_001418015_02005
Unannotated protein.
  
     0.643
GCA_001418015_01420
Unannotated protein.
       0.606
GCA_001418015_01423
Unannotated protein.
 
     0.603
GCA_001418015_01422
Unannotated protein.
 
     0.543
GCA_001418015_00524
Unannotated protein.
  
     0.528
GCA_001418015_01417
Unannotated protein.
       0.496
GCA_001418015_01065
Unannotated protein.
  
     0.494
GCA_001418015_01416
Unannotated protein.
       0.415
Your Current Organism:
Lacinutrix mariniflava
NCBI taxonomy Id: 342955
Other names: JCM 13824, KCCM 42306, L. mariniflava, Lacinutrix mariniflava Nedashkovskaya et al. 2008, Lacinutrix sp. AKS432, strain AKS432
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.