STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU39476.1Tetratricopeptide repeat-containing protein. (1306 aa)    
Predicted Functional Partners:
SFU39492.1
Hypothetical protein.
 
  
 0.969
SFU39420.1
Hypothetical protein.
 
  
 0.932
SFU39456.1
Peptidoglycan-synthase activator LpoB.
 
   
 0.932
SFU39442.1
Protein of unknown function.
 
   
 0.922
SFU39388.1
Uncharacterized membrane protein.
 
   
 0.892
SFU39404.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.880
SFU49594.1
Glycosyltransferase, GT2 family.
   
 
 0.736
SFU39366.1
Spherulation-specific family 4.
 
     0.690
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.618
SFU39510.1
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.589
Your Current Organism:
Acidovorax caeni
NCBI taxonomy Id: 343013
Other names: A. caeni, Acidovorax caeni Heylen et al. 2008, Acidovorax sp. R-24607, Acidovorax sp. R-24608, Acidovorax sp. R-24613, Acidovorax sp. R-24614, DSM 19327, LMG 24103, LMG:24103, strain R-24608
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.