STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU78738.1Amino acid ABC transporter substrate-binding protein, PAAT family. (295 aa)    
Predicted Functional Partners:
SFU78756.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
 0.958
SFU78759.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
 0.958
SFU78775.1
L-glutamate ABC transporter ATP-binding protein.
 
 0.940
SFU74092.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
 0.874
SFU74079.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
 0.873
SFU39003.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
 0.844
SFU79673.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.838
SFU38987.1
Amino acid ABC transporter membrane protein, PAAT family.
 
 0.805
SFU52905.1
Two-component system, unclassified family, sensor histidine kinase and response regulator.
   
 0.787
SFU88132.1
Signal transduction histidine kinase.
   
 0.787
Your Current Organism:
Acidovorax caeni
NCBI taxonomy Id: 343013
Other names: A. caeni, Acidovorax caeni Heylen et al. 2008, Acidovorax sp. R-24607, Acidovorax sp. R-24608, Acidovorax sp. R-24613, Acidovorax sp. R-24614, DSM 19327, LMG 24103, LMG:24103, strain R-24608
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