Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SG0140 | SG0259 | SG0140 | SG0259 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.620 |
SG0140 | SG1024 | SG0140 | SG1024 | Conserved hypothetical protein. | Putative lipoprotein protein. | 0.471 |
SG0140 | SG1055 | SG0140 | SG1055 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.632 |
SG0140 | SG2368 | SG0140 | SG2368 | Conserved hypothetical protein. | Uroporphyrinogen III methylase. | 0.587 |
SG0140 | tamB | SG0140 | SG0353 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.407 |
SG0140 | uspA | SG0140 | SG0074 | Conserved hypothetical protein. | Universal stress protein A. | 0.547 |
SG0259 | SG0140 | SG0259 | SG0140 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.620 |
SG0259 | SG1024 | SG0259 | SG1024 | Conserved hypothetical protein. | Putative lipoprotein protein. | 0.408 |
SG0259 | SG1055 | SG0259 | SG1055 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.453 |
SG0259 | SG2368 | SG0259 | SG2368 | Conserved hypothetical protein. | Uroporphyrinogen III methylase. | 0.519 |
SG0259 | cca | SG0259 | SG0258 | Conserved hypothetical protein. | tRNA nucleotidyl transferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | 0.642 |
SG0259 | cysZ | SG0259 | SG1680 | Conserved hypothetical protein. | Putative sulfate transport protein; High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway; Belongs to the CysZ family. | 0.515 |
SG0259 | rseB | SG0259 | SG1791 | Conserved hypothetical protein. | sigma-E factor regulator. | 0.453 |
SG0259 | slmA | SG0259 | SG2211 | Conserved hypothetical protein. | tetR-family transcriptional regulator; Required for nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. Acts as a DNA-associated cell division inhibitor that binds simultaneously chromosomal DNA and FtsZ, and disrupts the assembly of FtsZ polymers. SlmA-DNA-binding sequences (SBS) are dispersed on non-Ter regions of the chromosome, preventing FtsZ polymerization at these regions. | 0.429 |
SG0259 | tamB | SG0259 | SG0353 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.528 |
SG0259 | uspA | SG0259 | SG0074 | Conserved hypothetical protein. | Universal stress protein A. | 0.462 |
SG1024 | SG0140 | SG1024 | SG0140 | Putative lipoprotein protein. | Conserved hypothetical protein. | 0.471 |
SG1024 | SG0259 | SG1024 | SG0259 | Putative lipoprotein protein. | Conserved hypothetical protein. | 0.408 |
SG1024 | tamB | SG1024 | SG0353 | Putative lipoprotein protein. | Conserved hypothetical protein. | 0.421 |
SG1055 | SG0140 | SG1055 | SG0140 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.632 |
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