Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SG2371 | arcB | SG2371 | SG0220 | Transcriptional regulator. | Aerobic respiration sensor-response protein. | 0.435 |
SG2371 | guaB | SG2371 | SG1749 | Transcriptional regulator. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.438 |
SG2371 | lacI | SG2371 | SG1752 | Transcriptional regulator. | Putative lactose operon repressor. | 0.774 |
SG2371 | ptsG_1 | SG2371 | SG0859 | Transcriptional regulator. | PTS system N-acetylglucosamine-specific IIABC component. | 0.433 |
SG2371 | ptsH | SG2371 | SG1701 | Transcriptional regulator. | PTS system phosphocarrier protein HPr. | 0.476 |
SG2371 | ptsO | SG2371 | SG0195 | Transcriptional regulator. | Phosphocarrier protein NPr. | 0.472 |
arcB | SG2371 | SG0220 | SG2371 | Aerobic respiration sensor-response protein. | Transcriptional regulator. | 0.435 |
arcB | cytR_1 | SG0220 | SG0608 | Aerobic respiration sensor-response protein. | Xylitol repressor. | 0.428 |
arcB | guaB | SG0220 | SG1749 | Aerobic respiration sensor-response protein. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.674 |
arcB | lacI | SG0220 | SG1752 | Aerobic respiration sensor-response protein. | Putative lactose operon repressor. | 0.428 |
arcB | lexA | SG0220 | SG2141 | Aerobic respiration sensor-response protein. | lexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. Binds to the 16 bp palindromic sequence 5'-CTGTATATATATACAG-3'. In the presence of single- stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.418 |
arcB | ptsG_1 | SG0220 | SG0859 | Aerobic respiration sensor-response protein. | PTS system N-acetylglucosamine-specific IIABC component. | 0.416 |
arcB | rpoD | SG0220 | SG0251 | Aerobic respiration sensor-response protein. | RNA polymerase sigma-70 factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.501 |
cytR_1 | arcB | SG0608 | SG0220 | Xylitol repressor. | Aerobic respiration sensor-response protein. | 0.428 |
cytR_1 | guaB | SG0608 | SG1749 | Xylitol repressor. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.438 |
cytR_1 | lacI | SG0608 | SG1752 | Xylitol repressor. | Putative lactose operon repressor. | 0.770 |
cytR_1 | ptsG_1 | SG0608 | SG0859 | Xylitol repressor. | PTS system N-acetylglucosamine-specific IIABC component. | 0.433 |
cytR_1 | ptsH | SG0608 | SG1701 | Xylitol repressor. | PTS system phosphocarrier protein HPr. | 0.472 |
cytR_1 | ptsO | SG0608 | SG0195 | Xylitol repressor. | Phosphocarrier protein NPr. | 0.472 |
glmS | guaB | SG2417 | SG1749 | Glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.497 |
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