STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yteRUnannotated protein. (405 aa)    
Predicted Functional Partners:
pehX
Unannotated protein; Belongs to the glycosyl hydrolase 28 family.
  
  0.995
GCA_000805695_00115
Unannotated protein.
     0.995
xynB
Unannotated protein; Belongs to the glycosyl hydrolase 43 family.
   
 0.983
pemA_2
Unannotated protein.
 
 0.982
rhgT_1
Unannotated protein.
 
  0.968
rhgT_2
Unannotated protein.
 
  0.964
pemA_1
Unannotated protein.
 
 0.957
aes
Unannotated protein.
 
  
  0.934
kduI
Unannotated protein; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.789
pel
Unannotated protein.
 
   
 0.665
Your Current Organism:
Empedobacter falsenii
NCBI taxonomy Id: 343874
Other names: CCUG 51536, CIP 108861, E. falsenii, Empedobacter falsenii (Kampfer et al. 2006) Zhang et al. 2014, Wautersiella falsenii, Wautersiella falsenii (Kampfer et al. 2006) emend. Zhang et al. 2014, strain NF 993
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