STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000805695_01318Unannotated protein. (533 aa)    
Predicted Functional Partners:
GCA_000805695_00055
Unannotated protein.
  
 
 0.638
GCA_000805695_00434
Unannotated protein.
  
 
 0.638
GCA_000805695_00435
Unannotated protein.
  
 
 0.638
GCA_000805695_02674
Unannotated protein.
  
 
 0.638
hsdR_2
Unannotated protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.594
GCA_000805695_00430
Unannotated protein.
  
 
 0.594
GCA_000805695_01523
Unannotated protein.
  
 
 0.594
GCA_000805695_02671
Unannotated protein.
  
 
 0.594
GCA_000805695_02672
Unannotated protein.
  
 
 0.594
GCA_000805695_01317
Unannotated protein.
       0.495
Your Current Organism:
Empedobacter falsenii
NCBI taxonomy Id: 343874
Other names: CCUG 51536, CIP 108861, E. falsenii, Empedobacter falsenii (Kampfer et al. 2006) Zhang et al. 2014, Wautersiella falsenii, Wautersiella falsenii (Kampfer et al. 2006) emend. Zhang et al. 2014, strain NF 993
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