STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepTUnannotated protein; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. (413 aa)    
Predicted Functional Partners:
yngG
Unannotated protein.
  
    0.617
GCA_000805695_02076
Unannotated protein.
 
 
 0.568
GCA_000805695_02134
Unannotated protein.
       0.542
rocD2
Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
  0.503
argD_2
Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
  0.503
argD_1
Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
  0.503
GCA_000805695_01953
Unannotated protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
    0.474
pepP
Unannotated protein.
  
 
 0.465
argF
Unannotated protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
    
 0.448
guaB
Unannotated protein; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
 
 0.439
Your Current Organism:
Empedobacter falsenii
NCBI taxonomy Id: 343874
Other names: CCUG 51536, CIP 108861, E. falsenii, Empedobacter falsenii (Kampfer et al. 2006) Zhang et al. 2014, Wautersiella falsenii, Wautersiella falsenii (Kampfer et al. 2006) emend. Zhang et al. 2014, strain NF 993
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.