STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000805695_02398Unannotated protein. (330 aa)    
Predicted Functional Partners:
GCA_000805695_02399
Unannotated protein.
 
 0.981
ybhR_2
Unannotated protein.
 
    0.949
GCA_000805695_00390
Unannotated protein.
  
 
 0.798
tolC
Unannotated protein.
 
 0.748
czcA_5
Unannotated protein.
 
 0.737
czcA_2
Unannotated protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.734
GCA_000805695_00004
Unannotated protein.
 
 0.733
GCA_000805695_02745
Unannotated protein.
  
 0.691
yccS
Unannotated protein.
  
 
 0.669
GCA_000805695_02396
Unannotated protein.
       0.665
Your Current Organism:
Empedobacter falsenii
NCBI taxonomy Id: 343874
Other names: CCUG 51536, CIP 108861, E. falsenii, Empedobacter falsenii (Kampfer et al. 2006) Zhang et al. 2014, Wautersiella falsenii, Wautersiella falsenii (Kampfer et al. 2006) emend. Zhang et al. 2014, strain NF 993
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.