STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD07757.1Conserved hypothetical protein; Identified by match to protein family HMM PF07237. (117 aa)    
Predicted Functional Partners:
ACD08254.1
Putative transferase.
 
     0.502
ACD07906.1
Identified by match to protein family HMM PF05170.
   
    0.448
ACD06306.1
Identified by match to protein family HMM PF05532; Belongs to the UPF0337 (CsbD) family.
  
  
 0.411
ACD07011.1
methylated-DNA-[protein]-cysteine S-methyltransferase; Identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589.
       0.403
Your Current Organism:
Shigella boydii
NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94
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