Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACD06306.1 | ACD07757.1 | SbBS512_E4552 | SbBS512_E0385 | Identified by match to protein family HMM PF05532; Belongs to the UPF0337 (CsbD) family. | Conserved hypothetical protein; Identified by match to protein family HMM PF07237. | 0.411 |
ACD07011.1 | ACD07757.1 | SbBS512_E0384 | SbBS512_E0385 | methylated-DNA-[protein]-cysteine S-methyltransferase; Identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589. | Conserved hypothetical protein; Identified by match to protein family HMM PF07237. | 0.403 |
ACD07757.1 | ACD06306.1 | SbBS512_E0385 | SbBS512_E4552 | Conserved hypothetical protein; Identified by match to protein family HMM PF07237. | Identified by match to protein family HMM PF05532; Belongs to the UPF0337 (CsbD) family. | 0.411 |
ACD07757.1 | ACD07011.1 | SbBS512_E0385 | SbBS512_E0384 | Conserved hypothetical protein; Identified by match to protein family HMM PF07237. | methylated-DNA-[protein]-cysteine S-methyltransferase; Identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589. | 0.403 |
ACD07757.1 | ACD07906.1 | SbBS512_E0385 | SbBS512_E3929 | Conserved hypothetical protein; Identified by match to protein family HMM PF07237. | Identified by match to protein family HMM PF05170. | 0.448 |
ACD07757.1 | ACD08254.1 | SbBS512_E0385 | SbBS512_E1727 | Conserved hypothetical protein; Identified by match to protein family HMM PF07237. | Putative transferase. | 0.502 |
ACD07906.1 | ACD07757.1 | SbBS512_E3929 | SbBS512_E0385 | Identified by match to protein family HMM PF05170. | Conserved hypothetical protein; Identified by match to protein family HMM PF07237. | 0.448 |
ACD08254.1 | ACD07757.1 | SbBS512_E1727 | SbBS512_E0385 | Putative transferase. | Conserved hypothetical protein; Identified by match to protein family HMM PF07237. | 0.502 |