STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wzcTyrosine-protein kinase wzc; Identified by match to protein family HMM PF02706; match to protein family HMM TIGR01007. (720 aa)    
Predicted Functional Partners:
ACD07794.1
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
 
 
 0.998
yccZ
Outer membrane lipoprotein, group 4 capsule (G4C) polysaccharide; Identified by match to protein family HMM PF02563.
 
 
 0.992
ACD08853.1
Capsular polysaccharide biosynthesis protein; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025.
 
  
 0.983
wzb
Low molecular weight protein-tyrosine-phosphatase wzb; Identified by match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
 
 0.982
ymcB
Group 4 capsule (G4C) polysaccharide, YmcB; Identified by match to protein family HMM PF06251.
  
 
 0.968
etk1
Tyrosine-protein kinase etk; Identified by match to protein family HMM PF02706; match to protein family HMM TIGR01007.
 
 
0.944
nuoC
NADH-quinone oxidoreductase, C/D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
     
 0.882
etp
Low molecular weight protein-tyrosine-phosphatase; Identified by match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
 
 0.856
ACD09664.1
Wzx; Identified by match to protein family HMM PF01943.
  
  
 0.751
ydbK
Pyruvate-flavodoxin oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
 
 0.740
Your Current Organism:
Shigella boydii
NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.