STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vesConserved hypothetical protein; Identified by match to protein family HMM PF05962; Belongs to the Ves family. (191 aa)    
Predicted Functional Partners:
ACD07136.1
Putative acyltransferase; Identified by match to protein family HMM PF01757.
  
     0.603
wcaK
Colanic acid biosynthesis protein WcaK; Identified by match to protein family HMM PF04230.
  
     0.530
ACD06888.1
HNH endonuclease domain protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF05638; match to protein family HMM TIGR03344.
  
     0.492
ACD06887.1
chaC protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
  
     0.454
ycgR
Putative type IV pilus assembly protein PilZ; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
    0.448
spy
Identified by match to protein family HMM PF07813.
       0.443
nudD
GDP-mannose mannosyl hydrolase; Hydrolyzes GDP-mannose; Belongs to the Nudix hydrolase family.
  
     0.433
ACD07556.1
Conserved hypothetical protein; yihF; identified by match to protein family HMM PF06097.
  
     0.433
ACD08722.1
Identified by match to protein family HMM PF01261.
  
     0.409
ACD09028.1
Putative permease; Identified by match to protein family HMM PF03773.
  
     0.403
Your Current Organism:
Shigella boydii
NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.