STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appAPeriplasmic AppA protein; Identified by similarity to SP:P07102; match to protein family HMM PF00328. (432 aa)    
Predicted Functional Partners:
ribF
Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.
     
  0.900
ribE
Riboflavin synthase, alpha subunit; Identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187.
     
  0.900
ACD09690.1
NADPH-dependent FMN reductase; Identified by match to protein family HMM PF02525; match to protein family HMM PF03358; match to protein family HMM TIGR03567.
     
  0.900
ybjI
Phosphatase YbjI; Identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.
     
  0.900
ACD06860.1
HAD-superfamily hydrolase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.
     
  0.900
fre
NAD(P)H-flavin reductase; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970.
     
  0.900
aphA
Class B acid phosphatase; Identified by match to protein family HMM PF03767; match to protein family HMM TIGR01672; Belongs to the class B bacterial acid phosphatase family.
     
  0.900
hpaC
4-hydroxyphenylacetate 3-monooxygenase, reductase component; Identified by match to protein family HMM PF01613; match to protein family HMM TIGR02296.
     
  0.900
appB
Cytochrome bd-II oxidase, subunit II; Identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203.
  
  
 0.795
appC
Cytochrome bd-II oxidase, subunit I; Identified by match to protein family HMM PF01654.
  
  
 0.690
Your Current Organism:
Shigella boydii
NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.