ACD09462.1 protein (Shigella boydii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACD09462.1

Putative membrane protein; ybhM; identified by match to protein family HMM PF01027. (237 aa)

Predicted Functional Partners:

ACD07049.1

0.769

ACD06888.1

0.769

ACD10273.1

0.765

ACD10194.1

0.764

ACD07556.1

0.764

ACD10153.1

0.744

ACD07312.1

0.714

pqqL

0.713

ACD07123.1

0.684

ACD07718.1

0.670

Your Current Organism:

Shigella boydii

NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACD06888.1	ACD07049.1	SbBS512_E3883	SbBS512_E0600	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF05638; match to protein family HMM TIGR03344.	DnaJ domain protein; Identified by match to protein family HMM PF00226.	0.766
ACD06888.1	ACD07123.1	SbBS512_E3883	SbBS512_E1625	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF05638; match to protein family HMM TIGR03344.	Conserved hypothetical protein.	0.754
ACD06888.1	ACD07312.1	SbBS512_E3883	SbBS512_E0635	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF05638; match to protein family HMM TIGR03344.	Identified by match to protein family HMM PF00577.	0.736
ACD06888.1	ACD07556.1	SbBS512_E3883	SbBS512_E4334	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF05638; match to protein family HMM TIGR03344.	Conserved hypothetical protein; yihF; identified by match to protein family HMM PF06097.	0.772
ACD06888.1	ACD07718.1	SbBS512_E3883	SbBS512_E1096	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF05638; match to protein family HMM TIGR03344.	Side tail fiber protein; Identified by match to protein family HMM PF08400.	0.563
ACD06888.1	ACD09462.1	SbBS512_E3883	SbBS512_E2565	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF05638; match to protein family HMM TIGR03344.	Putative membrane protein; ybhM; identified by match to protein family HMM PF01027.	0.769
ACD06888.1	ACD10153.1	SbBS512_E3883	SbBS512_E2380	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF05638; match to protein family HMM TIGR03344.	Identified by match to protein family HMM PF00419.	0.747
ACD06888.1	ACD10194.1	SbBS512_E3883	SbBS512_E1759	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF05638; match to protein family HMM TIGR03344.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.773
ACD06888.1	ACD10273.1	SbBS512_E3883	SbBS512_E1492	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF05638; match to protein family HMM TIGR03344.	Putative membrane protein.	0.771
ACD06888.1	pqqL	SbBS512_E3883	SbBS512_E1758	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF05638; match to protein family HMM TIGR03344.	Peptidase, M16B family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family.	0.755
ACD07049.1	ACD06888.1	SbBS512_E0600	SbBS512_E3883	DnaJ domain protein; Identified by match to protein family HMM PF00226.	HNH endonuclease domain protein; Identified by match to protein family HMM PF01844; match to protein family HMM PF05638; match to protein family HMM TIGR03344.	0.766
ACD07049.1	ACD07123.1	SbBS512_E0600	SbBS512_E1625	DnaJ domain protein; Identified by match to protein family HMM PF00226.	Conserved hypothetical protein.	0.712
ACD07049.1	ACD07312.1	SbBS512_E0600	SbBS512_E0635	DnaJ domain protein; Identified by match to protein family HMM PF00226.	Identified by match to protein family HMM PF00577.	0.747
ACD07049.1	ACD07556.1	SbBS512_E0600	SbBS512_E4334	DnaJ domain protein; Identified by match to protein family HMM PF00226.	Conserved hypothetical protein; yihF; identified by match to protein family HMM PF06097.	0.756
ACD07049.1	ACD07718.1	SbBS512_E0600	SbBS512_E1096	DnaJ domain protein; Identified by match to protein family HMM PF00226.	Side tail fiber protein; Identified by match to protein family HMM PF08400.	0.775
ACD07049.1	ACD09462.1	SbBS512_E0600	SbBS512_E2565	DnaJ domain protein; Identified by match to protein family HMM PF00226.	Putative membrane protein; ybhM; identified by match to protein family HMM PF01027.	0.769
ACD07049.1	ACD10153.1	SbBS512_E0600	SbBS512_E2380	DnaJ domain protein; Identified by match to protein family HMM PF00226.	Identified by match to protein family HMM PF00419.	0.753
ACD07049.1	ACD10194.1	SbBS512_E0600	SbBS512_E1759	DnaJ domain protein; Identified by match to protein family HMM PF00226.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.754
ACD07049.1	ACD10273.1	SbBS512_E0600	SbBS512_E1492	DnaJ domain protein; Identified by match to protein family HMM PF00226.	Putative membrane protein.	0.758
ACD07049.1	pqqL	SbBS512_E0600	SbBS512_E1758	DnaJ domain protein; Identified by match to protein family HMM PF00226.	Peptidase, M16B family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; Belongs to the peptidase M16 family.	0.664

page 1 of 6

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About