STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD07714.1Glycyl-radical enzyme activating protein family; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494. (292 aa)    
Predicted Functional Partners:
ACD09069.1
Formate C-acetyltransferase 2; Identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774.
 
  
 0.965
ACD09880.1
Formate C-acetyltransferase 3; Identified by similarity to SP:P75793; match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774.
 
  
 0.849
pflB1
Formate acetyltransferase; Identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255.
 
  
 0.841
pflB2
Formate acetyltransferase; Identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255.
 
  
 0.839
ACD06741.1
PTS system, fructose family, IIB component; Identified by match to protein family HMM PF02379; match to protein family HMM TIGR00829.
  
    0.783
grcA
Autonomous glycyl radical cofactor; Acts as a radical domain for damaged PFL and possibly other radical proteins.
  
     0.767
ACD08620.1
PTS system, fructose family, IIB component; Identified by match to protein family HMM PF02379; match to protein family HMM TIGR00829.
       0.615
adhE
Aldehyde-alcohol dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
  
 0.610
ydbK
Pyruvate-flavodoxin oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.547
Your Current Organism:
Shigella boydii
NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.