STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDL57475.1COG2319 FOG: WD40 repeat. (1284 aa)    
Predicted Functional Partners:
RpoA_2
Probable DNA-directed RNA polymerase alpha chain; COG0457 FOG: TPR repeat.
   
  0.813
EDL62373.1
COG2319 FOG: WD40 repeat.
 
     0.779
Smc_3
COG2319 FOG: WD40 repeat.
  
   0.777
Smc_5
COG3064 Membrane protein involved in colicin uptake.
  
     0.775
EDL59816.1
Tyrosine protein kinase:WD-40 repeat:Serine/threonine protein kinase; COG2319 FOG: WD40 repeat.
  
     0.775
Smc_4
Vegetatible incompatibility protein HET-E1; COG2319 FOG: WD40 repeat.
  
     0.771
PknB_5
COG0515 Serine/threonine protein kinase.
  
   0.769
EDL57477.1
Hypothetical protein.
       0.762
MoeB_1
UBA/THIF-type NAD/FAD binding fold protein; COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily.
   
  0.696
EDL57478.1
Membrane-associated 30 kD protein-like protein; COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
 
     0.693
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.