STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDL61189.1Putative sugar transporter; COG0477 Permeases of the major facilitator superfamily. (429 aa)    
Predicted Functional Partners:
EDL61192.1
Periplasmic binding protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
  
 0.902
EDL61193.1
PepSY-associated TM helix; COG3182 Uncharacterized iron-regulated membrane protein.
 
     0.852
YusV_2
Fe(III) dicitrate ABC transporter, ATP-binding protein; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 
   
 0.850
HmuU_2
Fe(III) dicitrate ABC transporter, permease; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.816
XcpT_22
Hypothetical protein.
 
     0.796
YjjM
Hypothetical protein; COG1802 Transcriptional regulators.
  
     0.671
NedA_5
COG4409 Neuraminidase (sialidase).
 
     0.670
WapA
Polyhydroxyalkanoate synthesis repressor PhaR; COG5295 Autotransporter adhesin.
  
     0.663
EDL61194.1
Hypothetical protein.
       0.661
YcgJ_2
COG0500 SAM-dependent methyltransferases.
 
     0.625
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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