STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDL59482.1Putative rRNA methylase; COG1033 Predicted exporters of the RND superfamily. (990 aa)    
Predicted Functional Partners:
MoaA_2
Fe-S protein, radical SAM family; COG0535 Predicted Fe-S oxidoreductases.
 
     0.769
Shc_1
COG1657 Squalene cyclase.
 
     0.766
EDL57543.1
Terpene synthase:Squalene cyclase; COG1657 Squalene cyclase.
 
     0.764
MtnN
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; COG0775 Nucleoside phosphorylase.
 
     0.676
Shc_2
Probable squalene-hopene cyclase; COG1657 Squalene cyclase.
 
     0.665
EDL56072.1
Hypothetical protein; COG0042 tRNA-dihydrouridine synthase.
  
     0.659
EDL61445.1
Hypothetical protein; COG1033 Predicted exporters of the RND superfamily.
  
     0.655
EDL60796.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.649
EDL58236.1
Probable integral membrane protein; COG1033 Predicted exporters of the RND superfamily.
  
     0.585
EDL58812.1
Hypothetical protein; COG1078 HD superfamily phosphohydrolases.
  
     0.521
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.