STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GspD_1Probable type II secretion system protein; COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family. (744 aa)    
Predicted Functional Partners:
EDL59045.1
COG3745 Flp pilus assembly protein CpaB.
 
  
 0.878
EDL56996.1
COG3745 Flp pilus assembly protein CpaB.
 
  
 0.877
EDL60064.1
COG3745 Flp pilus assembly protein CpaB.
 
  
 0.865
EDL59043.1
COG4963 Flp pilus assembly protein, ATPase CpaE.
 
  
 0.824
EDL60066.1
Type II secretion system protein E; COG4962 Flp pilus assembly protein, ATPase CpaF.
 
  
 0.823
EDL60236.1
Secretion system protein TadA; COG4962 Flp pilus assembly protein, ATPase CpaF.
 
  
 0.821
EDL56995.1
Secretion system protein TadA; COG4962 Flp pilus assembly protein, ATPase CpaF.
 
  
 0.818
EDL60068.1
COG2064 Flp pilus assembly protein TadC.
 
  
 0.818
EDL56993.1
Type II secretion system protein; COG2064 Flp pilus assembly protein TadC.
 
  
 0.812
EDL60238.1
Probable secretion system protein TadC; COG2064 Flp pilus assembly protein TadC.
 
  
 0.803
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.