STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LolD_2Lipoprotein releasing system ATP-binding protein lolD; COG1136 ABC-type antimicrobial peptide transport system, ATPase component. (224 aa)    
Predicted Functional Partners:
MacB_6
Probable ABC transport system integral membrane protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.965
MacB_4
Probable ATP-binding/permease fusion ABC transporter; COG0577 ABC-type antimicrobial peptide transport system, permease component.
   0.962
YtrF_1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
   0.827
YtrF_2
Predicted permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
   0.818
YbbL
ABC transporter, ATP-binding protein; COG4619 ABC-type uncharacterized transport system, ATPase component.
  
     0.743
YtrB_1
ABC transporter ATP binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
  
     0.734
YtrF_3
COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
   0.704
LolC
Probable lipoprotein releasing system transmembrane protein LolC; COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
 
   0.674
YtrB_2
ABC transporter ATP binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
  
     0.650
MacB_1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
   0.633
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.