STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YdjH_2COG0524 Sugar kinases, ribokinase family. (320 aa)    
Predicted Functional Partners:
hisA
COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase.
  
    0.621
RbsB_2
Ribose ABC transporter (ribose-binding periplasmic component); COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.592
EDL56169.1
COG3216 Uncharacterized protein conserved in bacteria.
       0.559
AlsB
D-ribose-binding periplasmic protein; COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.558
RbsC_1
COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
  
 0.490
RbsC_3
COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
  
 0.473
HprA_2
Dehydrogenase; COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
 
   
 0.465
LacC
COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family.
 
  
 0.432
RbsA_1
Ribose transport ATP-binding protein RbsA; COG1129 ABC-type sugar transport system, ATPase component.
 
  
 0.406
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.