STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RfaGGlycosyl transferase, group 1; COG0438 Glycosyltransferase. (373 aa)    
Predicted Functional Partners:
IolI_2
Probable IolI protein; COG1082 Sugar phosphate isomerases/epimerases.
       0.773
TreZ
Alpha-amylase; COG0561 Predicted hydrolases of the HAD superfamily; Belongs to the glycosyl hydrolase 13 family.
  
 0.580
EDL60625.1
Hypothetical protein.
       0.572
TuaD
COG1004 Predicted UDP-glucose 6-dehydrogenase.
 
  
 0.499
glgB
Glycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.495
RmlC
dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.480
EDL61966.1
Hypothetical protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
    0.432
EDL61262.1
Nucleotide sugar epimerase (biosynthesis of lipopolysaccharide O antigen); COG0451 Nucleoside-diphosphate-sugar epimerases.
  
    0.407
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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