STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RbsC_3COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components. (313 aa)    
Predicted Functional Partners:
RbsB_2
Ribose ABC transporter (ribose-binding periplasmic component); COG1879 ABC-type sugar transport system, periplasmic component.
 0.999
AlsB
D-ribose-binding periplasmic protein; COG1879 ABC-type sugar transport system, periplasmic component.
 0.998
RbsA_3
ABC transporter related protein; COG1129 ABC-type sugar transport system, ATPase component.
 0.997
rbsA
Sugar (D-ribose) ABC transporter, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.992
RbsA_1
Ribose transport ATP-binding protein RbsA; COG1129 ABC-type sugar transport system, ATPase component.
 0.991
RbsB_1
ABC transporter sugar-binding protein; COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.983
RbsC_2
Sugar ABC transporter permease protein; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
  
  
 
0.919
RbsC_1
COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
  
  
 
0.917
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.570
YdjH_2
COG0524 Sugar kinases, ribokinase family.
 
  
 0.473
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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