STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDL56974.1Secretion protein HlyD; COG0845 Membrane-fusion protein. (368 aa)    
Predicted Functional Partners:
YbhF_7
ABC transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
  
 0.954
MdtE
Putative HlyD-like secretion protein; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.745
BepF_3
COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.743
HlyB
Probable toxin secretion ABC transporter ATP-binding protein; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
  
 
 0.600
EDL61290.1
COG0845 Membrane-fusion protein.
  
     0.564
MacB_4
Probable ATP-binding/permease fusion ABC transporter; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
  
 0.558
EDL62061.1
COG1538 Outer membrane protein.
 
   0.543
BepF_5
Acriflavine resistance protein A (Precursor); COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.507
EDL56973.1
Hypothetical protein.
       0.497
EDL56976.1
5-carboxymethyl-2-hydroxymuconate delta-isomerase; COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
       0.482
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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