STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afr_2Unknown conserved protein BH0710; COG0673 Predicted dehydrogenases and related proteins. (385 aa)    
Predicted Functional Partners:
EDL58334.1
Hypothetical protein.
 
    0.901
Gfo_6
NADH-dependent dyhydrogenase; COG0673 Predicted dehydrogenases and related proteins.
  
     0.732
EDL58333.1
Hypothetical protein; COG1482 Phosphomannose isomerase.
 
     0.728
YcjS_1
NADH-dependent dyhydrogenase; COG0673 Predicted dehydrogenases and related proteins.
  
     0.722
Gfo_9
NADH-dependent dyhydrogenase; COG0673 Predicted dehydrogenases and related proteins.
  
     0.711
EDL59395.1
Hypothetical protein; COG1082 Sugar phosphate isomerases/epimerases.
  
    0.575
IolE_3
Hypothetical protein; COG1082 Sugar phosphate isomerases/epimerases.
  
    0.546
greA
Transcription elongation factor greA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.525
EDL59027.1
Probable hexulose-6-phosphate isomerase; COG1082 Sugar phosphate isomerases/epimerases.
  
    0.519
IolE_2
Hypothetical protein; COG1082 Sugar phosphate isomerases/epimerases.
 
    0.516
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.