STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WbbLCOG1216 Predicted glycosyltransferases. (308 aa)    
Predicted Functional Partners:
EDL60112.1
NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.
     0.938
TagG
ABC-2; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.870
TagH
ABC O-antigen/lipopolysaccharide exporter, ATPase subunit; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
  
 0.811
EpsL
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 0.709
SunS
Glycosyl transferase, family 2; COG0463 Glycosyltransferases involved in cell wall biogenesis.
      0.690
RmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.670
WecA
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 0.632
EDL58919.1
Hypothetical protein.
       0.631
EDL58918.1
Rhamnosyltransferase; COG1216 Predicted glycosyltransferases.
    
0.609
RmlC
dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.598
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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