STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YmdBHypothetical protein; COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1. (179 aa)    
Predicted Functional Partners:
RarA
Hypothetical protein; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase.
      0.901
EDL58940.1
COG2267 Lysophospholipase.
       0.773
cmk
COG0283 Cytidylate kinase.
 
      0.645
FabG_4
Putative short-chain dehydrogenase family protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
      0.550
EpsD_2
COG0438 Glycosyltransferase.
       0.538
EDL58939.1
Hypothetical protein; COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit.
       0.511
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.