STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XpsDPutative outer membrane channel for pilus assembly CpaC; COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family. (590 aa)    
Predicted Functional Partners:
EDL59045.1
COG3745 Flp pilus assembly protein CpaB.
 
  
 0.941
EDL59043.1
COG4963 Flp pilus assembly protein, ATPase CpaE.
 
  
 0.915
EDL56996.1
COG3745 Flp pilus assembly protein CpaB.
 
  
 0.878
EDL56995.1
Secretion system protein TadA; COG4962 Flp pilus assembly protein, ATPase CpaF.
  
 0.837
EDL60066.1
Type II secretion system protein E; COG4962 Flp pilus assembly protein, ATPase CpaF.
  
 0.837
EDL60236.1
Secretion system protein TadA; COG4962 Flp pilus assembly protein, ATPase CpaF.
  
 0.837
EDL56993.1
Type II secretion system protein; COG2064 Flp pilus assembly protein TadC.
 
  
 0.821
EDL60068.1
COG2064 Flp pilus assembly protein TadC.
 
  
 0.821
EDL60238.1
Probable secretion system protein TadC; COG2064 Flp pilus assembly protein TadC.
 
  
 0.819
EDL60237.1
COG4965 Flp pilus assembly protein TadB.
 
  
 0.808
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.