STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YbbLABC transporter, ATP-binding protein; COG4619 ABC-type uncharacterized transport system, ATPase component. (234 aa)    
Predicted Functional Partners:
EDL57337.1
ABC transporter, inner membrane subunit; COG0390 ABC-type uncharacterized transport system, permease component.
  
 0.914
LacC
COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family.
       0.773
LolD_2
Lipoprotein releasing system ATP-binding protein lolD; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
     0.743
FusA_3
COG0480 Translation elongation factors (GTPases).
  
     0.703
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.676
EDL57329.1
Hypothetical protein; COG2755 Lysophospholipase L1 and related esterases.
       0.610
EDL55987.1
Cell division cycle protein; COG0464 ATPases of the AAA+ class.
  
     0.606
YbhF_1
ABC transporter (ATP-binding protein)-putative sodium extrusion ABC transporter; COG4555 ABC-type Na+ transport system, ATPase component.
  
     0.592
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
     0.578
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.556
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.