STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PknB_9COG0515 Serine/threonine protein kinase. (956 aa)    
Predicted Functional Partners:
EDL56091.1
COG0631 Serine/threonine protein phosphatase.
 
   0.831
Stp
COG0631 Serine/threonine protein phosphatase.
 
   0.831
RpoA_2
Probable DNA-directed RNA polymerase alpha chain; COG0457 FOG: TPR repeat.
   
 0.825
MoeB_1
UBA/THIF-type NAD/FAD binding fold protein; COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily.
   
  0.696
OdhI
Hypothetical protein; COG1716 FOG: FHA domain.
 
 
   0.636
RpoE_6
Probable RNA-polymerase sigma-E factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family.
   
   0.604
EDL59602.1
Protein kinase domain/TPR repeat protein; COG0457 FOG: TPR repeat.
  
 0.599
EDL61816.1
COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
    
 0.540
GarA_2
COG1716 FOG: FHA domain.
 
 
   0.530
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.517
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.