STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KdgAHypothetical protein; COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase. (215 aa)    
Predicted Functional Partners:
KdgK_3
PfkB; COG0524 Sugar kinases, ribokinase family.
 
 0.997
EDL57955.1
Glycolate oxidase subunit; COG0277 FAD/FMN-containing dehydrogenases.
   
 
 0.912
EDL57956.1
Glycolate oxidase subunit; COG0277 FAD/FMN-containing dehydrogenases.
   
 
 0.912
LutA_2
Hypothetical protein; COG0247 Fe-S oxidoreductase.
     
 0.902
SelA
COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase].
    
  0.900
PucG
Aminotransferase, class V; COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
     
  0.900
GapA
COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.862
pgi-2
COG0166 Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.856
Pyk
COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.853
Fba
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
    
 0.841
Your Current Organism:
Gimesia maris
NCBI taxonomy Id: 344747
Other names: G. maris DSM 8797, Gimesia maris DSM 8797, Planctomyces maris DSM 8797, Planctomyces maris str. DSM 8797, Planctomyces maris strain DSM 8797
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