STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG71935.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)    
Predicted Functional Partners:
KRG72043.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.489
KRG72044.1
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.489
KRG72045.1
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.489
tolR
Biopolymer transporter TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
   0.489
KRG70993.1
Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.489
KRG72046.1
Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.477
tolQ
Colicin transporter; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
   0.477
KRG70992.1
Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.477
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.421
KRG71951.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.414
Your Current Organism:
Pseudoxanthomonas dokdonensis
NCBI taxonomy Id: 344882
Other names: CIP 108839, DSM 21858, KCTC 12543, Pseudoxanthomonas dokdonensis (Yoon et al. 2006) Lee et al. 2008, Stenotrophomonas dokdonensis, Stenotrophomonas dokdonensis Yoon et al. 2006, strain DS-16
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