STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG69844.1Proline:sodium symporter PutP; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (495 aa)    
Predicted Functional Partners:
KRG68354.1
Integrase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.975
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.776
KRG68766.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.764
KRG69783.1
Carbon starvation protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.736
KRG71021.1
c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.670
KRG71603.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.608
KRG68313.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.583
KRG68916.1
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.553
KRG69845.1
Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
       0.544
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.534
Your Current Organism:
Pseudoxanthomonas dokdonensis
NCBI taxonomy Id: 344882
Other names: CIP 108839, DSM 21858, KCTC 12543, Pseudoxanthomonas dokdonensis (Yoon et al. 2006) Lee et al. 2008, Stenotrophomonas dokdonensis, Stenotrophomonas dokdonensis Yoon et al. 2006, strain DS-16
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