STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG68628.1Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)    
Predicted Functional Partners:
KRG71956.1
Peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.827
KRG70479.1
Long-chain fatty acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.827
KRG68613.1
Polyisoprenoid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0312 family.
       0.721
birA
Biotin--protein ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.719
KRG71528.1
Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.704
KRG70203.1
uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.
    
 0.704
KRG68614.1
Nucleoside-diphosphate sugar epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.700
KRG72065.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.592
KRG69775.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.592
KRG71133.1
Molybdopterin biosynthesis protein MoeB; ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.573
Your Current Organism:
Pseudoxanthomonas dokdonensis
NCBI taxonomy Id: 344882
Other names: CIP 108839, DSM 21858, KCTC 12543, Pseudoxanthomonas dokdonensis (Yoon et al. 2006) Lee et al. 2008, Stenotrophomonas dokdonensis, Stenotrophomonas dokdonensis Yoon et al. 2006, strain DS-16
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