A0A090KW83 protein (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A090KW83

TRAPP II complex, Trs120 family-containing protein. (1196 aa)

Predicted Functional Partners:

A0A090L7B3

0.998

A0A090LR66

0.998

A0A090MVR0

0.998

A0A090L906

0.997

A0A090MUN8

0.997

A0A090L3J6

0.994

A0A090MZL6

0.994

A0A090LAJ6

0.973

A0A090LDF7

0.947

A0A090LK15

0.934

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KW83	A0A090L3J6	TRAPP II complex, Trs120 family-containing protein.	annotation not available	0.994
A0A090KW83	A0A090L7B3	TRAPP II complex, Trs120 family-containing protein.	TRAPP II complex, TRAPPC10 family-containing protein.	0.998
A0A090KW83	A0A090L906	TRAPP II complex, Trs120 family-containing protein.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.997
A0A090KW83	A0A090LAJ6	TRAPP II complex, Trs120 family-containing protein.	Trafficking protein particle complex subunit 8.	0.973
A0A090KW83	A0A090LDF7	TRAPP II complex, Trs120 family-containing protein.	Trafficking protein particle complex subunit 12.	0.947
A0A090KW83	A0A090LK15	TRAPP II complex, Trs120 family-containing protein.	Trafficking protein particle complex subunit 11.	0.934
A0A090KW83	A0A090LR66	TRAPP II complex, Trs120 family-containing protein.	Probable trafficking protein particle complex subunit 2.	0.998
A0A090KW83	A0A090MUN8	TRAPP II complex, Trs120 family-containing protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.997
A0A090KW83	A0A090MVR0	TRAPP II complex, Trs120 family-containing protein.	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.998
A0A090KW83	A0A090MZL6	TRAPP II complex, Trs120 family-containing protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.994
A0A090L3J6	A0A090KW83	annotation not available	TRAPP II complex, Trs120 family-containing protein.	0.994
A0A090L3J6	A0A090L7B3	annotation not available	TRAPP II complex, TRAPPC10 family-containing protein.	0.993
A0A090L3J6	A0A090L906	annotation not available	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.999
A0A090L3J6	A0A090LAJ6	annotation not available	Trafficking protein particle complex subunit 8.	0.999
A0A090L3J6	A0A090LDF7	annotation not available	Trafficking protein particle complex subunit 12.	0.973
A0A090L3J6	A0A090LK15	annotation not available	Trafficking protein particle complex subunit 11.	0.991
A0A090L3J6	A0A090LR66	annotation not available	Probable trafficking protein particle complex subunit 2.	0.999
A0A090L3J6	A0A090MUN8	annotation not available	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999
A0A090L3J6	A0A090MVR0	annotation not available	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.999
A0A090L3J6	A0A090MZL6	annotation not available	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999