STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A090L7H9HECT domain-containing protein. (1018 aa)    
Predicted Functional Partners:
A0A090MU36
E3 ubiquitin-protein ligase TRIP12.
     
0.830
A0A090LKS8
Polyubiquitin-C.
    
 0.505
A0A090LC01
Ubiquitin-40S ribosomal protein S27a.
    
 0.503
A0A090LBI1
Uncharacterized protein.
   
 0.467
A0A090L551
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.461
A0A090L993
Ubiquitin-like domain and Ubiquitin family-containing protein.
    
 0.461
A0A090L7G6
annotation not available
    
 0.453
A0A090L8N1
NEDD8.
    
 0.453
A0A090LAH5
Belongs to the ubiquitin-conjugating enzyme family.
    
 0.419
Your Current Organism:
Strongyloides ratti
NCBI taxonomy Id: 34506
Other names: S. ratti
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.