A0A090LAB0 protein (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A090LAB0

P-loop containing Nucleoside triphosphate hydrolase domain-containing protein. (521 aa)

Predicted Functional Partners:

A0A090LU76

0.777

A0A090LBD8

0.585

A0A090LML1

0.573

A0A090LN99

0.572

A0A090L3Q9

0.564

A0A090LKE0

0.564

A0A090N0X5

0.561

A0A090MYG1

0.556

A0A090LDP6

0.523

A0A090MU36

0.513

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L3Q9	A0A090LAB0	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	0.564
A0A090L3Q9	A0A090LDP6	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	ATP-dependent RNA helicase DHX29.	0.833
A0A090L3Q9	A0A090LKE0	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin heavy chain.	0.540
A0A090L3Q9	A0A090LML1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.990
A0A090L3Q9	A0A090LN99	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.995
A0A090L3Q9	A0A090MU36	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	E3 ubiquitin-protein ligase TRIP12.	0.404
A0A090L3Q9	A0A090MYG1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Drab5.	0.866
A0A090L3Q9	A0A090N0X5	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-50; Belongs to the adaptor complexes medium subunit family.	0.978
A0A090LAB0	A0A090L3Q9	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.564
A0A090LAB0	A0A090LBD8	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	Uncharacterized protein.	0.585
A0A090LAB0	A0A090LDP6	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	ATP-dependent RNA helicase DHX29.	0.523
A0A090LAB0	A0A090LKE0	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	Clathrin heavy chain.	0.564
A0A090LAB0	A0A090LML1	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.573
A0A090LAB0	A0A090LN99	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.572
A0A090LAB0	A0A090LU76	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	Rabenosyn-5.	0.777
A0A090LAB0	A0A090MU36	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	E3 ubiquitin-protein ligase TRIP12.	0.513
A0A090LAB0	A0A090MYG1	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	Drab5.	0.556
A0A090LAB0	A0A090N0X5	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	AP-50; Belongs to the adaptor complexes medium subunit family.	0.561
A0A090LBD8	A0A090LAB0	Uncharacterized protein.	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	0.585
A0A090LBD8	A0A090LU76	Uncharacterized protein.	Rabenosyn-5.	0.819