STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A090LBV1annotation not available (495 aa)    
Predicted Functional Partners:
A0A090LCS3
Protein LTV1 homolog.
    
 0.709
A0A090L946
Bystin.
    
 0.675
A0A090LB41
Serine/threonine-protein kinase RIO2.
    
 0.671
A0A090LGR0
Pre-rRNA-processing protein TSR1 homolog.
    
 0.637
A0A090LF90
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.629
A0A090LDX0
40S ribosomal protein S3.
    
 0.622
A0A090L551
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.620
A0A090LPN8
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
  0.604
A0A090L0K5
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
  0.582
A0A090LKM3
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
    
  0.552
Your Current Organism:
Strongyloides ratti
NCBI taxonomy Id: 34506
Other names: S. ratti
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