STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A090LEM9Activator of basal transcription 1. (258 aa)    
Predicted Functional Partners:
A0A090L7B0
Ribosomal RNA processing protein 36 homolog.
   
 
 0.995
A0A090LCY3
Probable ATP-dependent RNA helicase DDX49.
   
 
 0.989
A0A090LE02
Digestive organ expansion factor homolog.
   
 
 0.986
A0A090L884
RNA helicase.
   
 
 0.985
A0A090KWA4
ESF1 homolog.
   
 
 0.984
A0A090MTU4
KRR1 small subunit processome component homolog.
   
 
 0.984
A0A090L946
Bystin.
   
 
 0.982
A0A090LA37
Nucleolar protein 14.
   
 
 0.980
A0A090L3G8
U3 small nucleolar RNA-associated protein 6 homolog.
   
 
 0.978
A0A090L5M6
ATP-dependent RNA helicase DHX8.
   
 
 0.970
Your Current Organism:
Strongyloides ratti
NCBI taxonomy Id: 34506
Other names: S. ratti
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.