A0A090LQV0 protein (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A090LQV0

DB domain-containing protein. (230 aa)

Predicted Functional Partners:

A0A090LAD2

0.642

A0A090KWT1

0.511

A0A090L188

0.511

A0A090L7L7

0.511

A0A090MU97

0.511

A0A090KZP1

0.494

A0A090L8H8

0.494

A0A090KWZ6

0.493

A0A090L1N1

0.493

A0A090LG21

0.493

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KWT1	A0A090KWZ6	LRAT-like domain-containing protein.	annotation not available	0.791
A0A090KWT1	A0A090KZP1	LRAT-like domain-containing protein.	Heat shock protein 83.	0.906
A0A090KWT1	A0A090L1N1	LRAT-like domain-containing protein.	annotation not available	0.791
A0A090KWT1	A0A090L8H8	LRAT-like domain-containing protein.	annotation not available	0.906
A0A090KWT1	A0A090LG21	LRAT-like domain-containing protein.	annotation not available	0.791
A0A090KWT1	A0A090LQV0	LRAT-like domain-containing protein.	DB domain-containing protein.	0.511
A0A090KWZ6	A0A090KWT1	annotation not available	LRAT-like domain-containing protein.	0.791
A0A090KWZ6	A0A090KZP1	annotation not available	Heat shock protein 83.	0.824
A0A090KWZ6	A0A090L188	annotation not available	LRAT-like domain-containing protein.	0.791
A0A090KWZ6	A0A090L7L7	annotation not available	Heat shock 70 kDa protein 1A/1B; Belongs to the heat shock protein 70 family.	0.791
A0A090KWZ6	A0A090L8H8	annotation not available	annotation not available	0.824
A0A090KWZ6	A0A090LAD2	annotation not available	MAP kinase-activated protein kinase 2.	0.645
A0A090KWZ6	A0A090LQV0	annotation not available	DB domain-containing protein.	0.493
A0A090KWZ6	A0A090MU97	annotation not available	HAD-like domain-containing protein.	0.791
A0A090KZP1	A0A090KWT1	Heat shock protein 83.	LRAT-like domain-containing protein.	0.906
A0A090KZP1	A0A090KWZ6	Heat shock protein 83.	annotation not available	0.824
A0A090KZP1	A0A090L188	Heat shock protein 83.	LRAT-like domain-containing protein.	0.906
A0A090KZP1	A0A090L1N1	Heat shock protein 83.	annotation not available	0.943
A0A090KZP1	A0A090L7L7	Heat shock protein 83.	Heat shock 70 kDa protein 1A/1B; Belongs to the heat shock protein 70 family.	0.986
A0A090KZP1	A0A090LG21	Heat shock protein 83.	annotation not available	0.878