L596_030712 protein (Steinernema carpocapsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L596_030712

PWI domain-containing protein. (122 aa)

Predicted Functional Partners:

L596_002686

0.994

L596_013639

0.988

L596_023283

0.987

L596_016969

0.986

L596_018729

0.985

L596_014543

0.982

L596_007407

0.978

L596_008505

0.973

L596_008152

0.957

L596_017827

0.945

Your Current Organism:

Steinernema carpocapsae

NCBI taxonomy Id: 34508
Other names: Neoaplectana carpocapsae, S. carpocapsae, Steinernema sp. LE-2017

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L596_002686	L596_007407	A0A4U8UQG2	A0A4U5P966	Uncharacterized protein.	CPSF_A domain-containing protein.	0.993
L596_002686	L596_008152	A0A4U8UQG2	A0A4U5PBV4	Uncharacterized protein.	Sm domain-containing protein.	0.993
L596_002686	L596_008505	A0A4U8UQG2	A0A4U5PCZ0	Uncharacterized protein.	MIF4G domain-containing protein.	0.987
L596_002686	L596_013639	A0A4U8UQG2	A0A4U5P0S7	Uncharacterized protein.	Uncharacterized protein.	0.997
L596_002686	L596_014543	A0A4U8UQG2	A0A4U5ND41	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	0.998
L596_002686	L596_016969	A0A4U8UQG2	A0A4U5MZW5	Uncharacterized protein.	Uncharacterized protein.	0.923
L596_002686	L596_017827	A0A4U8UQG2	A0A4U5N385	Uncharacterized protein.	Uncharacterized protein.	0.644
L596_002686	L596_018729	A0A4U8UQG2	A0A4U5N6L7	Uncharacterized protein.	Uncharacterized protein.	0.987
L596_002686	L596_023283	A0A4U8UQG2	A0A4U5MD69	Uncharacterized protein.	RRM domain-containing protein.	0.999
L596_002686	L596_030712	A0A4U8UQG2	A0A4U5LNI4	Uncharacterized protein.	PWI domain-containing protein.	0.994
L596_007407	L596_002686	A0A4U5P966	A0A4U8UQG2	CPSF_A domain-containing protein.	Uncharacterized protein.	0.993
L596_007407	L596_008152	A0A4U5P966	A0A4U5PBV4	CPSF_A domain-containing protein.	Sm domain-containing protein.	0.999
L596_007407	L596_008505	A0A4U5P966	A0A4U5PCZ0	CPSF_A domain-containing protein.	MIF4G domain-containing protein.	0.995
L596_007407	L596_013639	A0A4U5P966	A0A4U5P0S7	CPSF_A domain-containing protein.	Uncharacterized protein.	0.998
L596_007407	L596_014543	A0A4U5P966	A0A4U5ND41	CPSF_A domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	0.999
L596_007407	L596_016969	A0A4U5P966	A0A4U5MZW5	CPSF_A domain-containing protein.	Uncharacterized protein.	0.998
L596_007407	L596_017827	A0A4U5P966	A0A4U5N385	CPSF_A domain-containing protein.	Uncharacterized protein.	0.902
L596_007407	L596_018729	A0A4U5P966	A0A4U5N6L7	CPSF_A domain-containing protein.	Uncharacterized protein.	0.971
L596_007407	L596_023283	A0A4U5P966	A0A4U5MD69	CPSF_A domain-containing protein.	RRM domain-containing protein.	0.987
L596_007407	L596_030712	A0A4U5P966	A0A4U5LNI4	CPSF_A domain-containing protein.	PWI domain-containing protein.	0.978